miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|209568179|gb|GE350393.1|GE350393 TTTTTTTTTTTTTTTTTGACAACAGGAAGTAACTATAAGATTTCATTAACGCATAACAAGTGGAAGAAGAGAAGAAAAAA
ATTGTTTCCAATCGATTACATTGCTATTTGAAAGAACTGATAAATTATTACAAGTTTTTCTAAAGAACAATCATTCTACT
ACTTGCAGAAGGGGAAACGATAGATATCCCCAGCAGCCAAAAATGGATTTTCCGACATCTCTTCGCCTAATGCATATCAA
TTTTCTATTGTATAAGAAATCATTTTGTTCTCTTTCAAAAGTGGTTTAAAAGAAAAGCAAGAGAAGAAAAGAGAAGGGTA
AAGGAAAAAATCCCTACCAGTCAAAAATTTCTACTCCTTACTCTGCTGCAAGGCAATCACCACAGATCAAGAGTTTAAAA
TAATCTGAGATTGCACAATCCATCAGAGATCTCGAAGTAGTGCATTTCAACTCAGGACACAATCTTGAAGATGAGGGAGA
CTTTGATTTATGTACTTGTCCCACAGTGGCTTATACCTGCCTATAGCTACCTTTAGCCATGGCTTCATATTCCCATTGAA
GTGAATAACTGCCGCACTTTCAATAAGGCGGTTGTCAATATTTAGGTCATAACCCAATCCTAGAACATGCCATCTTCTGT
CAAGTGGCTCTGTCAAACCATAAAAACACAGAAGAGCAGGAGGAAGTGTCCCCAACTTCCAGAGTGTACCATCAGCATTC
TGCTCCTGCCAATAGTGATATCTTGCGGTCACATTCGCCTTCCTCCATGCCACCAAGTCAAAAACGTTCATACCAAATGC
CCATGCGCATGCCTGTGGATCAAACCTCGAGCTTATAATTGAATTTGAGAAGTTGAGATACTTGTAATACCGAT




Most similar to sp|Q949Q1|GAUTB_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11
           OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1
          Length = 537

 Score =  263 bits (673), Expect = 9e-70
 Identities = 116/139 (83%), Positives = 128/139 (92%)
 Frame = -3

Query: 872 RYYKYLNFSNSIISSRFDPQACAWAFGMNVFDLVAWRKANVTARYHYWQEQNADGTLWKL 693
           RYYKYLNFSN +ISS+FDPQAC WAFGMNVFDL+AWR ANVTARYHYWQ+QN + TLWKL
Sbjct: 397 RYYKYLNFSNPLISSKFDPQACGWAFGMNVFDLIAWRNANVTARYHYWQDQNRERTLWKL 456

Query: 692 GTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKVAIGRY 513
           GTLPP LL FYGLTEPLDRRWHVLGLGYD+NIDNRLIE+AAVIH+NGNMKPWLK+AIGRY
Sbjct: 457 GTLPPGLLSFYGLTEPLDRRWHVLGLGYDVNIDNRLIETAAVIHYNGNMKPWLKLAIGRY 516

Query: 512 KPLWDKYINQSLPHLQDCV 456
           KP W K++N S P+LQDCV
Sbjct: 517 KPFWLKFLNSSHPYLQDCV 535